Whole Genome Sequencing
Get all whole genome sequencing data
This will return an object containing all the data for all PGP-UK participants.
get/all_wgs
Response
Success
Example response
{
"hex_id": "uk35C650",
"data": [
{
"study_accession": "PRJEB17529",
"secondary_study_accession": "ERP019394",
"sample_accession": "SAMEA4545245",
"secondary_sample_accession": "ERS1444424",
"experiment_accession": "ERX1796409",
"run_accession": "ERR1726424",
"submission_accession": "ERA763569",
"tax_id": "9606",
"scientific_name": "Homo sapiens",
"instrument_platform": "ILLUMINA",
"instrument_model": "HiSeq X Ten",
"library_name": "unspecified",
"nominal_length": "350",
"library_layout": "PAIRED",
"library_strategy": "WGS",
"library_source": "GENOMIC",
"library_selection": "unspecified",
"read_count": "421675357",
"base_count": "122196048169",
"center_name": "UNIVERSITY COLLEGE LONDON",
"first_public": "2016-11-14",
"last_updated": "2018-11-16",
"experiment_title": "HiSeq X Ten paired end sequencing",
"study_title": "Personal Genome Project - United Kingdom",
"study_alias": "ena-STUDY-UNIVERSITY COLLEGE LONDON-31-10-2016-15:46:14:765-442",
"experiment_alias": "ena-EXPERIMENT-UNIVERSITY COLLEGE LONDON-11-11-2016-16:52:13:609-1",
"run_alias": "ena-RUN-UNIVERSITY COLLEGE LONDON-11-11-2016-16:52:13:609-1",
"fastq_bytes": "34749676071;39793159517",
"fastq_md5": "4251226f83e65e79547998e9f6508125;763cd21e39a58b16ea51229c25ed549d",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_2.fastq.gz",
"fastq_aspera": "fasp.sra.ebi.ac.uk:/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_2.fastq.gz",
"fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_2.fastq.gz",
"submitted_bytes": "99613921671",
"submitted_md5": "400cb05ddf9204980c407a0870584d53",
"submitted_ftp": "ftp.sra.ebi.ac.uk/vol1/run/ERR172/ERR1726424/FR07961001.bam",
"submitted_aspera": "fasp.sra.ebi.ac.uk:/vol1/run/ERR172/ERR1726424/FR07961001.bam",
"submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/run/ERR172/ERR1726424/FR07961001.bam",
"submitted_format": "BAM",
"sra_bytes": "54785787176",
"sra_md5": "3fee48d335865149260ef98f6d32dd06",
"sra_ftp": "ftp.sra.ebi.ac.uk/vol1/err/ERR172/004/ERR1726424",
"sra_aspera": "fasp.sra.ebi.ac.uk:/vol1/err/ERR172/004/ERR1726424",
"sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR172/004/ERR1726424",
"sample_alias": "uk35C650",
"sample_title": "Personal Genomes Project UK Sample",
"nominal_sdev": "0",
"first_created": "2016-11-11",
"type": "wgs",
"meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB17529&result=read_run"
}
]
}