v1

latestOpenAPI 3.0.0Creative Commons 0 (CC0)2026-07-14281583.4 KB

Whole Genome Bisulfite Data

Get all whole genome bisulfite data by PGP-UK hex id

This will return an object containing all the data associated with this PGP-UK participant

get/wgbs/{pgp_hex_id}

Path parameters

pgp_hex_idstring required

PGP-UK unique participant id

Example:uk35C650

The hex id for the PGP-UK participant for whom the data needs to be fetched

Response

Success

study_accessionstring

secondary_study_accessionstring

sample_accessionstring

secondary_sample_accessionstring

experiment_accessionstring

run_accessionstring

submission_accessionstring

tax_idstring

scientific_namestring

instrument_platformstring

instrument_modelstring

library_namestring

nominal_lengthstring

library_layoutstring

library_strategystring

library_sourcestring

library_selectionstring

read_countstring

base_countstring

center_namestring

first_publicstring

last_updatedstring

experiment_titlestring

study_titlestring

study_aliasstring

experiment_aliasstring

run_aliasstring

fastq_bytesstring

fastq_md5string

fastq_ftpstring

fastq_asperastring

fastq_galaxystring

submitted_bytesstring

submitted_md5string

submitted_ftpstring

submitted_asperastring

submitted_galaxystring

submitted_formatstring

sra_bytesstring

sra_md5string

sra_ftpstring

sra_asperastring

sra_galaxystring

cram_index_ftpstring

cram_index_asperastring

cram_index_galaxystring

sample_aliasstring

broker_namestring

sample_titlestring

nominal_sdevstring

first_createdstring

typestring

meta_data_sourcestring

Example response

[
  {
    "study_accession": "PRJEB17529",
    "secondary_study_accession": "ERP019394",
    "sample_accession": "SAMEA104569288",
    "secondary_sample_accession": "ERS2180572",
    "experiment_accession": "ERX2408504",
    "run_accession": "ERR2359938",
    "submission_accession": "ERA1231734",
    "tax_id": "9606",
    "scientific_name": "Homo sapiens",
    "instrument_platform": "ILLUMINA",
    "instrument_model": "HiSeq X Ten",
    "library_name": "WGBS_PGP-UK1",
    "nominal_length": "200",
    "library_layout": "PAIRED",
    "library_strategy": "Bisulfite-Seq",
    "library_source": "GENOMIC",
    "library_selection": "unspecified",
    "read_count": "331458549",
    "base_count": "100100481798",
    "center_name": "UNIVERSITY COLLEGE LONDON",
    "first_public": "2018-03-02",
    "last_updated": "2018-11-16",
    "experiment_title": "HiSeq X Ten paired end sequencing",
    "study_title": "Personal Genome Project - United Kingdom",
    "study_alias": "ena-STUDY-UNIVERSITY COLLEGE LONDON-31-10-2016-15:46:14:765-442",
    "experiment_alias": "ena-EXPERIMENT-UNIVERSITY COLLEGE LONDON-02-03-2018-11:09:49:265-1",
    "run_alias": "ena-RUN-UNIVERSITY COLLEGE LONDON-02-03-2018-11:09:49:265-1",
    "fastq_bytes": "24038102709;30691271584",
    "fastq_md5": "61a8c3a3eb4996f154ecd2affd5b37c9;5af7635bc077d3927badf7549bf68145",
    "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
    "fastq_aspera": "fasp.sra.ebi.ac.uk:/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
    "fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
    "submitted_bytes": "67859734776;9225496",
    "submitted_md5": "a4c151ee46fffc4a2c627416b7d75724;de36e8391912baf4ab781c57b62c7023",
    "submitted_ftp": "ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam.bai",
    "submitted_aspera": "fasp.sra.ebi.ac.uk:/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam;fasp.sra.ebi.ac.uk:/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam.bai",
    "submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam.bai",
    "submitted_format": "BAM;BAI",
    "sra_bytes": "53481571970",
    "sra_md5": "3d71cf685fe26ebd019bc50aadb08fd1",
    "sra_ftp": "ftp.sra.ebi.ac.uk/vol1/err/ERR235/008/ERR2359938",
    "sra_aspera": "fasp.sra.ebi.ac.uk:/vol1/err/ERR235/008/ERR2359938",
    "sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR235/008/ERR2359938",
    "sample_alias": "WGBS_PGP-UK1",
    "sample_title": "PGP-UK Whole Genome Bissulfide Sequencing Data",
    "nominal_sdev": "0",
    "first_created": "2018-03-02",
    "type": "wgbs",
    "meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB17529&result=read_run"
  }
]