v1

latestOpenAPI 3.0.0Creative Commons 0 (CC0)2026-07-14281583.4 KB
Whole Genome Bisulfite Data

Get all whole genome bisulfite data

This will return an object containing all the data for all PGP-UK participants.

get/all_wgbs

Response

Success

hex_idstring

PGP-UK unique participant id

Example response

{
  "hex_id": "uk35C650",
  "data": [
    {
      "study_accession": "PRJEB17529",
      "secondary_study_accession": "ERP019394",
      "sample_accession": "SAMEA104569288",
      "secondary_sample_accession": "ERS2180572",
      "experiment_accession": "ERX2408504",
      "run_accession": "ERR2359938",
      "submission_accession": "ERA1231734",
      "tax_id": "9606",
      "scientific_name": "Homo sapiens",
      "instrument_platform": "ILLUMINA",
      "instrument_model": "HiSeq X Ten",
      "library_name": "WGBS_PGP-UK1",
      "nominal_length": "200",
      "library_layout": "PAIRED",
      "library_strategy": "Bisulfite-Seq",
      "library_source": "GENOMIC",
      "library_selection": "unspecified",
      "read_count": "331458549",
      "base_count": "100100481798",
      "center_name": "UNIVERSITY COLLEGE LONDON",
      "first_public": "2018-03-02",
      "last_updated": "2018-11-16",
      "experiment_title": "HiSeq X Ten paired end sequencing",
      "study_title": "Personal Genome Project - United Kingdom",
      "study_alias": "ena-STUDY-UNIVERSITY COLLEGE LONDON-31-10-2016-15:46:14:765-442",
      "experiment_alias": "ena-EXPERIMENT-UNIVERSITY COLLEGE LONDON-02-03-2018-11:09:49:265-1",
      "run_alias": "ena-RUN-UNIVERSITY COLLEGE LONDON-02-03-2018-11:09:49:265-1",
      "fastq_bytes": "24038102709;30691271584",
      "fastq_md5": "61a8c3a3eb4996f154ecd2affd5b37c9;5af7635bc077d3927badf7549bf68145",
      "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
      "fastq_aspera": "fasp.sra.ebi.ac.uk:/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
      "fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
      "submitted_bytes": "67859734776;9225496",
      "submitted_md5": "a4c151ee46fffc4a2c627416b7d75724;de36e8391912baf4ab781c57b62c7023",
      "submitted_ftp": "ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam.bai",
      "submitted_aspera": "fasp.sra.ebi.ac.uk:/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam;fasp.sra.ebi.ac.uk:/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam.bai",
      "submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR235/ERR2359938/P3255_101_S1_L001.bam.bai",
      "submitted_format": "BAM;BAI",
      "sra_bytes": "53481571970",
      "sra_md5": "3d71cf685fe26ebd019bc50aadb08fd1",
      "sra_ftp": "ftp.sra.ebi.ac.uk/vol1/err/ERR235/008/ERR2359938",
      "sra_aspera": "fasp.sra.ebi.ac.uk:/vol1/err/ERR235/008/ERR2359938",
      "sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR235/008/ERR2359938",
      "sample_alias": "WGBS_PGP-UK1",
      "sample_title": "PGP-UK Whole Genome Bissulfide Sequencing Data",
      "nominal_sdev": "0",
      "first_created": "2018-03-02",
      "type": "wgbs",
      "meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB17529&result=read_run"
    }
  ]
}