RNA-Seq
Get all RNA-seq data by PGP-UK hex id
This will return an object containing all the data associated with this PGP-UK participant
get/rna_seq/{pgp_hex_id}
Path parameters
pgp_hex_idstring required
PGP-UK unique participant id
Example:uk35C650
The hex id for the PGP-UK participant for whom the data needs to be fetched
Response
Success
Example response
[
{
"source_name": "Sample_1_PGPUK_B1",
"commentena_sample": "ERS2220941",
"commentbiosd_sample": "SAMEA4545245",
"characteristicsorganism": "Homo sapiens",
"characteristicsdisease": "normal",
"characteristicssex": "male",
"characteristicsindividual": "uk35C650",
"characteristicsage": "59.67",
"unittime_unit": "year",
"term_source_ref": "EFO",
"term_accession_number": "UO_0000036",
"characteristicsclinical_history": "smoked in the past",
"characteristicsorganism_part": "blood",
"material_type": "RNA",
"protocol_ref": " ",
"extract_name": "Sample_1_PGPUK_B1",
"commentlibrary_layout": "PAIRED",
"commentlibrary_selection": "PolyA",
"commentlibrary_source": "TRANSCRIPTOMIC",
"commentlibrary_strategy": "RNA-Seq",
"commentnominal_length": "150",
"commentnominal_sdev": "1.92",
"commentorientation": "5'-3'-3'-5'",
"performer": "UCL",
"assay_name": "Sample_1_PGPUK_B1",
"technology_type": "sequencing assay",
"commentena_experiment": "ERX2373316",
"scan_name": "PGP_UK_RNAseq_P5_R1.fastq.gz",
"commentsubmitted_file_name": "PGP_UK_RNAseq_P5_R1.fastq.gz",
"commentena_run": "ERR2322363",
"commentfastq_uri": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz",
"commentspot_length": "302",
"commentread_index_1_base_coord": "152",
"derived_array_data_file": " ",
"comment_derived_arrayexpress_ftp_file": " ",
"factor_valueclinical_history": "smoked in the past",
"factor_valueindividual": "uk2E2AAE",
"factor_valueprotocol": "RNA-seq",
"type": "rna_seq",
"accession": "E-MTAB-6523",
"meta_data_source": "https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-6523/E-MTAB-6523.sdrf.txt"
}
]