v1

latestOpenAPI 3.0.0Creative Commons 0 (CC0)2026-07-14281583.4 KB
RNA-Seq

Get all RNA-seq data

This will return an object containing all the data for all PGP-UK participants.

get/all_rna_seq

Response

Success

hex_idstring

PGP-UK unique participant id

Example response

{
  "hex_id": "uk35C650",
  "data": [
    {
      "source_name": "Sample_1_PGPUK_B1",
      "commentena_sample": "ERS2220941",
      "commentbiosd_sample": "SAMEA4545245",
      "characteristicsorganism": "Homo sapiens",
      "characteristicsdisease": "normal",
      "characteristicssex": "male",
      "characteristicsindividual": "uk35C650",
      "characteristicsage": "59.67",
      "unittime_unit": "year",
      "term_source_ref": "EFO",
      "term_accession_number": "UO_0000036",
      "characteristicsclinical_history": "smoked in the past",
      "characteristicsorganism_part": "blood",
      "material_type": "RNA",
      "protocol_ref": "  ",
      "extract_name": "Sample_1_PGPUK_B1",
      "commentlibrary_layout": "PAIRED",
      "commentlibrary_selection": "PolyA",
      "commentlibrary_source": "TRANSCRIPTOMIC",
      "commentlibrary_strategy": "RNA-Seq",
      "commentnominal_length": "150",
      "commentnominal_sdev": "1.92",
      "commentorientation": "5'-3'-3'-5'",
      "performer": "UCL",
      "assay_name": "Sample_1_PGPUK_B1",
      "technology_type": "sequencing assay",
      "commentena_experiment": "ERX2373316",
      "scan_name": "PGP_UK_RNAseq_P5_R1.fastq.gz",
      "commentsubmitted_file_name": "PGP_UK_RNAseq_P5_R1.fastq.gz",
      "commentena_run": "ERR2322363",
      "commentfastq_uri": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz",
      "commentspot_length": "302",
      "commentread_index_1_base_coord": "152",
      "derived_array_data_file": "  ",
      "comment_derived_arrayexpress_ftp_file": "  ",
      "factor_valueclinical_history": "smoked in the past",
      "factor_valueindividual": "uk2E2AAE",
      "factor_valueprotocol": "RNA-seq",
      "type": "rna_seq",
      "accession": "E-MTAB-6523",
      "meta_data_source": "https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-6523/E-MTAB-6523.sdrf.txt"
    }
  ]
}