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latestOpenAPI 3.0.0Creative Commons 0 (CC0)2026-07-14281583.4 KB
Proton RNA-Seq

Get all proton RNA-seq data by PGP-UK hex id

This will return an object containing all the data associated with this PGP-UK participant

get/proton_rna_seq/{pgp_hex_id}

Path parameters

pgp_hex_idstring required

PGP-UK unique participant id

Example:uk35C650

The hex id for the PGP-UK participant for whom the data needs to be fetched

Response

Success

study_accessionstring
secondary_study_accessionstring
sample_accessionstring
secondary_sample_accessionstring
experiment_accessionstring
run_accessionstring
submission_accessionstring
tax_idstring
scientific_namestring
instrument_platformstring
instrument_modelstring
library_namestring
nominal_lengthstring
library_layoutstring
library_strategystring
library_sourcestring
library_selectionstring
read_countstring
base_countstring
center_namestring
first_publicstring
last_updatedstring
experiment_titlestring
study_titlestring
study_aliasstring
experiment_aliasstring
run_aliasstring
fastq_bytesstring
fastq_md5string
fastq_ftpstring
fastq_asperastring
fastq_galaxystring
submitted_bytesstring
submitted_md5string
submitted_ftpstring
submitted_asperastring
submitted_galaxystring
submitted_formatstring
sra_bytesstring
sra_md5string
sra_ftpstring
sra_asperastring
sra_galaxystring
cram_index_ftpstring
cram_index_asperastring
cram_index_galaxystring
sample_aliasstring
broker_namestring
sample_titlestring
nominal_sdevstring
first_createdstring
typestring
meta_data_sourcestring

Example response

[
  {
    "study_accession": "PRJEB25139",
    "secondary_study_accession": "ERP107030",
    "sample_accession": "SAMEA104609659",
    "secondary_sample_accession": "ERS2220941",
    "experiment_accession": "ERX2373316",
    "run_accession": "ERR2322363",
    "submission_accession": "ERA1221153",
    "tax_id": "9606",
    "scientific_name": "Homo sapiens",
    "instrument_platform": "ILLUMINA",
    "instrument_model": "Illumina HiSeq 4000",
    "library_name": "Sample_1_PGPUK_B1_p",
    "nominal_length": "150",
    "library_layout": "PAIRED",
    "library_strategy": "RNA-Seq",
    "library_source": "TRANSCRIPTOMIC",
    "library_selection": "PolyA",
    "read_count": "37396432",
    "base_count": "11293722464",
    "center_name": "UCL Cancer Institute",
    "first_public": "2018-03-04",
    "last_updated": "2018-11-16",
    "experiment_title": "Illumina HiSeq 4000 paired end sequencing; RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
    "study_title": "RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
    "study_alias": "E-MTAB-6523",
    "experiment_alias": "E-MTAB-6523:Sample_1_PGPUK_B1_p",
    "run_alias": "E-MTAB-6523:PGP_UK_RNAseq_P5_R",
    "fastq_bytes": "2974710855;3291128705",
    "fastq_md5": "ea8ffd28a6aa15f9d99b0eea7a6794a9;a950a80003e3cf2439079741d377c0c7",
    "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_2.fastq.gz",
    "fastq_aspera": "fasp.sra.ebi.ac.uk:/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_2.fastq.gz",
    "fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_2.fastq.gz",
    "submitted_bytes": "3378020402;3716035107",
    "submitted_md5": "ab4d907b998e5cbe8074b818ea2d75bf;9f821e099bd0cbcd70846586cd12aff9",
    "submitted_ftp": "ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R2.fastq.gz",
    "submitted_aspera": "fasp.sra.ebi.ac.uk:/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R2.fastq.gz",
    "submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R2.fastq.gz",
    "submitted_format": "FASTQ;FASTQ",
    "sra_bytes": "4859258720",
    "sra_md5": "1f4963be0f7b479578ca539bd9e42288",
    "sra_ftp": "ftp.sra.ebi.ac.uk/vol1/err/ERR232/003/ERR2322363",
    "sra_aspera": "fasp.sra.ebi.ac.uk:/vol1/err/ERR232/003/ERR2322363",
    "sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR232/003/ERR2322363",
    "sample_alias": "E-MTAB-6523:Sample_1_PGPUK_B1",
    "broker_name": "ArrayExpress",
    "sample_title": "Sample_1_PGPUK_B1",
    "nominal_sdev": "2",
    "first_created": "2018-02-22",
    "type": "proton_rna_seq",
    "meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB25139&result=read_run"
  }
]