Proton RNA-Seq
Get all proton RNA-seq data
This will return an object containing all the data for all PGP-UK participants.
get/all_proton_rna_seq
Response
Success
Example response
{
"hex_id": "uk35C650",
"data": [
{
"study_accession": "PRJEB25139",
"secondary_study_accession": "ERP107030",
"sample_accession": "SAMEA104609659",
"secondary_sample_accession": "ERS2220941",
"experiment_accession": "ERX2373316",
"run_accession": "ERR2322363",
"submission_accession": "ERA1221153",
"tax_id": "9606",
"scientific_name": "Homo sapiens",
"instrument_platform": "ILLUMINA",
"instrument_model": "Illumina HiSeq 4000",
"library_name": "Sample_1_PGPUK_B1_p",
"nominal_length": "150",
"library_layout": "PAIRED",
"library_strategy": "RNA-Seq",
"library_source": "TRANSCRIPTOMIC",
"library_selection": "PolyA",
"read_count": "37396432",
"base_count": "11293722464",
"center_name": "UCL Cancer Institute",
"first_public": "2018-03-04",
"last_updated": "2018-11-16",
"experiment_title": "Illumina HiSeq 4000 paired end sequencing; RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
"study_title": "RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
"study_alias": "E-MTAB-6523",
"experiment_alias": "E-MTAB-6523:Sample_1_PGPUK_B1_p",
"run_alias": "E-MTAB-6523:PGP_UK_RNAseq_P5_R",
"fastq_bytes": "2974710855;3291128705",
"fastq_md5": "ea8ffd28a6aa15f9d99b0eea7a6794a9;a950a80003e3cf2439079741d377c0c7",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_2.fastq.gz",
"fastq_aspera": "fasp.sra.ebi.ac.uk:/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_2.fastq.gz",
"fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_2.fastq.gz",
"submitted_bytes": "3378020402;3716035107",
"submitted_md5": "ab4d907b998e5cbe8074b818ea2d75bf;9f821e099bd0cbcd70846586cd12aff9",
"submitted_ftp": "ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R2.fastq.gz",
"submitted_aspera": "fasp.sra.ebi.ac.uk:/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R2.fastq.gz",
"submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322363/PGP_UK_RNAseq_P5_R2.fastq.gz",
"submitted_format": "FASTQ;FASTQ",
"sra_bytes": "4859258720",
"sra_md5": "1f4963be0f7b479578ca539bd9e42288",
"sra_ftp": "ftp.sra.ebi.ac.uk/vol1/err/ERR232/003/ERR2322363",
"sra_aspera": "fasp.sra.ebi.ac.uk:/vol1/err/ERR232/003/ERR2322363",
"sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR232/003/ERR2322363",
"sample_alias": "E-MTAB-6523:Sample_1_PGPUK_B1",
"broker_name": "ArrayExpress",
"sample_title": "Sample_1_PGPUK_B1",
"nominal_sdev": "2",
"first_created": "2018-02-22",
"type": "proton_rna_seq",
"meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB25139&result=read_run"
}
]
}