Participants
Get all data
This will return an object containing all the data for all PGP-UK participants.
get/all_participants
Response
Success
Example response
{
"hex_id": "uk35C650",
"data": [
{
"wgs": [
{
"study_accession": "PRJEB17529",
"secondary_study_accession": "ERP019394",
"sample_accession": "SAMEA4545245",
"secondary_sample_accession": "ERS1444424",
"experiment_accession": "ERX1796409",
"run_accession": "ERR1726424",
"submission_accession": "ERA763569",
"tax_id": "9606",
"scientific_name": "Homo sapiens",
"instrument_platform": "ILLUMINA",
"instrument_model": "HiSeq X Ten",
"library_name": "unspecified",
"nominal_length": "350",
"library_layout": "PAIRED",
"library_strategy": "WGS",
"library_source": "GENOMIC",
"library_selection": "unspecified",
"read_count": "421675357",
"base_count": "122196048169",
"center_name": "UNIVERSITY COLLEGE LONDON",
"first_public": "2016-11-14",
"last_updated": "2018-11-16",
"experiment_title": "HiSeq X Ten paired end sequencing",
"study_title": "Personal Genome Project - United Kingdom",
"study_alias": "ena-STUDY-UNIVERSITY COLLEGE LONDON-31-10-2016-15:46:14:765-442",
"experiment_alias": "ena-EXPERIMENT-UNIVERSITY COLLEGE LONDON-11-11-2016-16:52:13:609-1",
"run_alias": "ena-RUN-UNIVERSITY COLLEGE LONDON-11-11-2016-16:52:13:609-1",
"fastq_bytes": "34749676071;39793159517",
"fastq_md5": "4251226f83e65e79547998e9f6508125;763cd21e39a58b16ea51229c25ed549d",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_2.fastq.gz",
"fastq_aspera": "fasp.sra.ebi.ac.uk:/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_2.fastq.gz",
"fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_2.fastq.gz",
"submitted_bytes": "99613921671",
"submitted_md5": "400cb05ddf9204980c407a0870584d53",
"submitted_ftp": "ftp.sra.ebi.ac.uk/vol1/run/ERR172/ERR1726424/FR07961001.bam",
"submitted_aspera": "fasp.sra.ebi.ac.uk:/vol1/run/ERR172/ERR1726424/FR07961001.bam",
"submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/run/ERR172/ERR1726424/FR07961001.bam",
"submitted_format": "BAM",
"sra_bytes": "54785787176",
"sra_md5": "3fee48d335865149260ef98f6d32dd06",
"sra_ftp": "ftp.sra.ebi.ac.uk/vol1/err/ERR172/004/ERR1726424",
"sra_aspera": "fasp.sra.ebi.ac.uk:/vol1/err/ERR172/004/ERR1726424",
"sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR172/004/ERR1726424",
"sample_alias": "uk35C650",
"sample_title": "Personal Genomes Project UK Sample",
"nominal_sdev": "0",
"first_created": "2016-11-11",
"type": "wgs",
"meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB17529&result=read_run"
}
],
"variant": [
{
"test": "example",
"analysis_accession": "ERZ389530",
"study_accession": "PRJEB17529",
"secondary_study_accession": "ERP019394",
"sample_accession": "SAMEA4545245",
"secondary_sample_accession": "ERS1444424",
"analysis_title": "Variants from sample FR07961001 from the PGP_UK project",
"analysis_type": "SEQUENCE_VARIATION",
"center_name": "UCL Cancer Institute",
"first_public": "2017-02-07",
"last_updated": "2017-05-19",
"study_title": "Personal Genome Project - United Kingdom",
"tax_id": "9606",
"scientific_name": "Homo sapiens",
"analysis_alias": "FR07961001_PGP_UK",
"study_alias": "ena-STUDY-UNIVERSITY COLLEGE LONDON-31-10-2016-15:46:14:765-442",
"submitted_bytes": "1540561;132;86497812",
"submitted_md5": "737122c594f8ed045d930d13dc6aa1a5;9c30fb152058bd5e61bab4a5f1d7e568;746fe08cd1ea28b79382b68a3418172c",
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"submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/ERZ389/ERZ389530/FR07961001.pass.recode.vcf.gz.tbi;ftp.sra.ebi.ac.uk/vol1/ERZ389/ERZ389530/ERZ389530.md5;ftp.sra.ebi.ac.uk/vol1/ERZ389/ERZ389530/FR07961001.pass.recode.vcf.gz",
"sample_alias": "uk35C650",
"broker_name": "EBI",
"sample_title": "Personal Genomes Project UK Sample",
"type": "variant",
"meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB17529&result=analysis"
}
],
"genotype": [
{
"published": "06/08/2017",
"file_source": "Participant",
"date": "2014-05-15",
"description": "Genotyping data",
"download_url": "https://my.personalgenomes.org.uk/user_file/download/166",
"data_type": "23andMe",
"name": "uk35C650_23andMe",
"pgp_hex_id": "uk35C650",
"type": "genotype"
}
],
"wgbs": [
{
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"run_accession": "ERR2359938",
"submission_accession": "ERA1231734",
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"scientific_name": "Homo sapiens",
"instrument_platform": "ILLUMINA",
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"library_name": "WGBS_PGP-UK1",
"nominal_length": "200",
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"library_strategy": "Bisulfite-Seq",
"library_source": "GENOMIC",
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"center_name": "UNIVERSITY COLLEGE LONDON",
"first_public": "2018-03-02",
"last_updated": "2018-11-16",
"experiment_title": "HiSeq X Ten paired end sequencing",
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"experiment_alias": "ena-EXPERIMENT-UNIVERSITY COLLEGE LONDON-02-03-2018-11:09:49:265-1",
"run_alias": "ena-RUN-UNIVERSITY COLLEGE LONDON-02-03-2018-11:09:49:265-1",
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"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
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"fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR235/008/ERR2359938/ERR2359938_2.fastq.gz",
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"submitted_md5": "a4c151ee46fffc4a2c627416b7d75724;de36e8391912baf4ab781c57b62c7023",
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"sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR235/008/ERR2359938",
"sample_alias": "WGBS_PGP-UK1",
"sample_title": "PGP-UK Whole Genome Bissulfide Sequencing Data",
"nominal_sdev": "0",
"first_created": "2018-03-02",
"type": "wgbs",
"meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB17529&result=read_run"
}
],
"meth_array": [
{
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"commentbiosd_sample": "SAMEA4545245",
"characteristicsorganism_part": "blood",
"characteristicsage": "59.67",
"unittime_unit": "year",
"term_source_ref": "EFO",
"term_accession_number": "UO_0000036",
"characteristicssex": "male",
"characteristicssmoking_status": "smoked in the past",
"commentupdate_information": " ",
"material_type": "organism part",
"protocol_ref": "P-MTAB-53554",
"extract_name": "Sample 1_PGPUK_B1",
"labeled_extract_name": "Sample 1_PGPUK_B1:Cy3",
"label": "Cy3",
"assay_name": "101130760050_R04C02",
"technology_type": "array assay",
"array_design_ref": "A-GEOD-18809",
"array_data_file": "101130760050_R04C02_Grn.idat",
"comment_arrayexpress_ftp_file": "ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-5377/E-MTAB-5377.raw.1.zip",
"factor_valueage": "59.67",
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"factor_value_smoking_status": "smoked in the past",
"factor_value_individual": "uk35C650",
"type": "meth_array",
"accession": "E-MTAB-5377",
"meta_data_source": "https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-5377/E-MTAB-5377.sdrf.txt"
}
],
"rna_seq": [
{
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"characteristicsage": "59.67",
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"term_source_ref": "EFO",
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"characteristicsclinical_history": "smoked in the past",
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"material_type": "RNA",
"protocol_ref": " ",
"extract_name": "Sample_1_PGPUK_B1",
"commentlibrary_layout": "PAIRED",
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"commentorientation": "5'-3'-3'-5'",
"performer": "UCL",
"assay_name": "Sample_1_PGPUK_B1",
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"scan_name": "PGP_UK_RNAseq_P5_R1.fastq.gz",
"commentsubmitted_file_name": "PGP_UK_RNAseq_P5_R1.fastq.gz",
"commentena_run": "ERR2322363",
"commentfastq_uri": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322363/ERR2322363_1.fastq.gz",
"commentspot_length": "302",
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"derived_array_data_file": " ",
"comment_derived_arrayexpress_ftp_file": " ",
"factor_valueclinical_history": "smoked in the past",
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"type": "rna_seq",
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"meta_data_source": "https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-6523/E-MTAB-6523.sdrf.txt"
}
],
"amplicon_rna_seq": [
{
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"center_name": "UCL Cancer Institute",
"first_public": "2018-03-04",
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"experiment_title": "Ion Torrent Proton sequencing; RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
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"study_alias": "E-MTAB-6523",
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}
],
"proton_rna_seq": [
{
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"first_public": "2018-03-04",
"last_updated": "2018-11-16",
"experiment_title": "Illumina HiSeq 4000 paired end sequencing; RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
"study_title": "RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
"study_alias": "E-MTAB-6523",
"experiment_alias": "E-MTAB-6523:Sample_1_PGPUK_B1_p",
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"sample_alias": "E-MTAB-6523:Sample_1_PGPUK_B1",
"broker_name": "ArrayExpress",
"sample_title": "Sample_1_PGPUK_B1",
"nominal_sdev": "2",
"first_created": "2018-02-22",
"type": "proton_rna_seq",
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}
],
"download_url": [
{
"type": "WGS Bam",
"download_url": "ftp.sra.ebi.ac.uk/vol1/run/ERR172/ERR1726424/FR07961001.bam"
}
],
"pgp_profile": [
{
"public_profile_url": "https://my.personalgenomes.org.uk/profile/uk35C650",
"zip": "CB22 4NZ",
"files": [
{
"file_source": "PGP",
"download_url": "https://my.personalgenomes.org.uk/datasets/193/download",
"data_type": "Genome Report",
"name": "Genome Report (Released by PGP-UK on 23rd October 2018)",
"description": "Genotyping data",
"data": "2014-05-15"
}
],
"hex": "uk35C650",
"real_name": "Stephan Beck",
"type": "pgp_profile"
}
],
"genome_report": [
{
"published": "03/08/2018",
"file_source": "PGP",
"download_url": "https://my.personalgenomes.org.uk/datasets/183/download",
"data_type": "Methylome Report",
"name": "Methylome Report (Released by PGP-UK on 8th March 2018)",
"pgp_hex_id": "uk35C650",
"type": "methylome_report"
}
],
"methylome_report": [
{
"published": "03/08/2018",
"file_source": "PGP",
"download_url": "https://my.personalgenomes.org.uk/datasets/183/download",
"data_type": "Methylome Report",
"name": "Methylome Report (Released by PGP-UK on 8th March 2018)",
"pgp_hex_id": "uk35C650",
"type": "methylome_report"
}
],
"phenotype": [
{
"name": "General Questionnaire",
"data": [
{
"question": "Age at Sample Collection"
}
]
}
]
}
]
}