Amplicon RNA-Seq
Get all amplicon RNA-seq data by PGP-UK hex id
This will return an object containing all the data associated with this PGP-UK participant
get/amplicon_rna_seq/{pgp_hex_id}
Path parameters
pgp_hex_idstring required
PGP-UK unique participant id
Example:uk35C650
The hex id for the PGP-UK participant for whom the data needs to be fetched
Response
Success
Example response
[
{
"study_accession": "PRJEB25139",
"secondary_study_accession": "ERP107030",
"sample_accession": "SAMEA104609659",
"secondary_sample_accession": "ERS2220941",
"experiment_accession": "ERX2373326",
"run_accession": "ERR2322353",
"submission_accession": "ERA1221153",
"tax_id": "9606",
"scientific_name": "Homo sapiens",
"instrument_platform": "ION_TORRENT",
"instrument_model": "Ion Torrent Proton",
"library_name": "Sample_1_PGPUK_B1_targeted_s",
"library_layout": "SINGLE",
"library_strategy": "AMPLICON",
"library_source": "TRANSCRIPTOMIC",
"library_selection": "other",
"read_count": "48318330",
"base_count": "5401783388",
"center_name": "UCL Cancer Institute",
"first_public": "2018-03-04",
"last_updated": "2018-11-16",
"experiment_title": "Ion Torrent Proton sequencing; RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
"study_title": "RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10",
"study_alias": "E-MTAB-6523",
"experiment_alias": "E-MTAB-6523:Sample_1_PGPUK_B1_targeted_s",
"run_alias": "E-MTAB-6523:Sample_1_PGPUK_B1_targeted",
"fastq_bytes": "3243673089",
"fastq_md5": "cbceea7c037751116150b07cebf70bbe",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322353/ERR2322353.fastq.gz",
"fastq_aspera": "fasp.sra.ebi.ac.uk:/vol1/fastq/ERR232/003/ERR2322353/ERR2322353.fastq.gz",
"fastq_galaxy": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR232/003/ERR2322353/ERR2322353.fastq.gz",
"submitted_bytes": "3234931107",
"submitted_md5": "c1353f0fd28a51877c8c942f7a1e839b",
"submitted_ftp": "ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322353/PGP_UK_Targeted_RNAseq_P1.fastq.gz",
"submitted_aspera": "fasp.sra.ebi.ac.uk:/vol1/run/ERR232/ERR2322353/PGP_UK_Targeted_RNAseq_P1.fastq.gz",
"submitted_galaxy": "ftp.sra.ebi.ac.uk/vol1/run/ERR232/ERR2322353/PGP_UK_Targeted_RNAseq_P1.fastq.gz",
"submitted_format": "FASTQ",
"sra_bytes": "3536769595",
"sra_md5": "ae69b02bc7859285cc2eee164bd776c9",
"sra_ftp": "ftp.sra.ebi.ac.uk/vol1/err/ERR232/003/ERR2322353",
"sra_aspera": "fasp.sra.ebi.ac.uk:/vol1/err/ERR232/003/ERR2322353",
"sra_galaxy": "ftp.sra.ebi.ac.uk/vol1/err/ERR232/003/ERR2322353",
"sample_alias": "E-MTAB-6523:Sample_1_PGPUK_B1",
"broker_name": "ArrayExpress",
"sample_title": "Sample_1_PGPUK_B1",
"first_created": "2018-02-22",
"type": "amplicon_rna_seq",
"meta_data_source": "https://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=PRJEB25139&result=read_run"
}
]