v1

latestOpenAPI 3.0.12026-08-06107337528.9 KB
Virus

Get virus genome metadata in a tabular format

Get virus genome metadata in tabular format for virus genomes by taxon.

get/virus/taxon/{taxon}/genome/table

Path parameters

taxonstring required

NCBI Taxonomy ID or name (common or scientific) at any taxonomic rank

Query parameters

accessionsstring[]

One or more nucleotide sequence accessions

refseq_onlyboolean

If true, limit results to RefSeq genomes.

annotated_onlyboolean

If true, limit results to annotated genomes.

released_sincestring date-time
updated_sincestring date-time
hoststring

Limit to genomes isolated from the specified host species (NCBI Taxonomy ID, common or scientific name).

pangolin_classificationstring

Limit to SARS-CoV-2 genomes from the specified Pango lineage.

geo_locationstring

Limit to genomes collected from the specified geographic location.

usa_statestring

Limit to genomes collected from the specified U.S. state (two-letter abbreviation).

complete_onlyboolean

Limit to genomes designated as complete, as defined by the submitter.

table_fieldsV2VirusTableField[]

Specify which fields to include in the tabular report

include_sequenceV2ViralSequenceType[]

Specify which sequence files to include in the data package.

aux_reportV2VirusDatasetReportType[]

Specify which report files to include in the data package. The virus data report is always included, and its inclusion is not affected by this parameter.

format'tsv' | 'csv' | 'jsonl'

Choose download format (tsv, csv or jsonl)

Response

A successful response

datastring