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latestOpenAPI 3.0.0Apache 2.0 License2026-07-14107682538.8 KB

Initiates a multipart read set upload for uploading partitioned source files into a sequence store. You can directly import source files from an EC2 instance and other local compute, or from an S3 bucket. To separate these source files into parts, use the split operation. Each part cannot be larger than 100 MB. If the operation is successful, it provides an uploadId which is required by the UploadReadSetPart API operation to upload parts into a sequence store.

To continue uploading a multipart read set into your sequence store, you must use the UploadReadSetPart API operation to upload each part individually following the steps below:

  • Specify the uploadId obtained from the previous call to CreateMultipartReadSetUpload.

  • Upload parts for that uploadId.

When you have finished uploading parts, use the CompleteMultipartReadSetUpload API to complete the multipart read set upload and to retrieve the final read set IDs in the response.

To learn more about creating parts and the split operation, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.

post/sequencestore/{sequenceStoreId}/upload

Path parameters

sequenceStoreIdstring required

The sequence store ID for the store that is the destination of the multipart uploads.

Request body

clientTokenstring

An idempotency token that can be used to avoid triggering multiple multipart uploads.

sourceFileType'FASTQ' | 'BAM' | 'CRAM' | 'UBAM' required

The type of file being uploaded.

subjectIdstring required

The source's subject ID.

sampleIdstring required

The source's sample ID.

generatedFromstring

Where the source originated.

referenceArnstring

The ARN of the reference.

namestring required

The name of the read set.

descriptionstring

The description of the read set.

tagsobject

Any tags to add to the read set.

Response

Success

sequenceStoreIdstring required

The sequence store ID for the store that the read set will be created in.

uploadIdstring required

The ID for the initiated multipart upload.

sourceFileType'FASTQ' | 'BAM' | 'CRAM' | 'UBAM' required

The file type of the read set source.

subjectIdstring required

The source's subject ID.

sampleIdstring required

The source's sample ID.

generatedFromstring

The source of the read set.

referenceArnstring required

The read set source's reference ARN.

namestring

The name of the read set.

descriptionstring

The description of the read set.

tagsobject

The tags to add to the read set.

creationTimestring date-time required

The creation time of the multipart upload.